Diaz A.,Polytechnic University of Valencia |
Fergany M.,Center for Research in Agricultural Genomics UAB |
Fergany M.,Ain Shams University |
Formisano G.,University of Naples Federico II |
And 28 more authors.
BMC Plant Biology | Year: 2011
Background: A number of molecular marker linkage maps have been developed for melon (Cucumis melo L.) over the last two decades. However, these maps were constructed using different marker sets, thus, making comparative analysis among maps difficult. In order to solve this problem, a consensus genetic map in melon was constructed using primarily highly transferable anchor markers that have broad potential use for mapping, synteny, and comparative quantitative trait loci (QTL) analysis, increasing breeding effectiveness and efficiency via marker-assisted selection (MAS).Results: Under the framework of the International Cucurbit Genomics Initiative (ICuGI, http://www.icugi.org), an integrated genetic map has been constructed by merging data from eight independent mapping experiments using a genetically diverse array of parental lines. The consensus map spans 1150 cM across the 12 melon linkage groups and is composed of 1592 markers (640 SSRs, 330 SNPs, 252 AFLPs, 239 RFLPs, 89 RAPDs, 15 IMAs, 16 indels and 11 morphological traits) with a mean marker density of 0.72 cM/marker. One hundred and ninety-six of these markers (157 SSRs, 32 SNPs, 6 indels and 1 RAPD) were newly developed, mapped or provided by industry representatives as released markers, including 27 SNPs and 5 indels from genes involved in the organic acid metabolism and transport, and 58 EST-SSRs. Additionally, 85 of 822 SSR markers contributed by Syngenta Seeds were included in the integrated map. In addition, 370 QTL controlling 62 traits from 18 previously reported mapping experiments using genetically diverse parental genotypes were also integrated into the consensus map. Some QTL associated with economically important traits detected in separate studies mapped to similar genomic positions. For example, independently identified QTL controlling fruit shape were mapped on similar genomic positions, suggesting that such QTL are possibly responsible for the phenotypic variability observed for this trait in a broad array of melon germplasm.Conclusions: Even though relatively unsaturated genetic maps in a diverse set of melon market types have been published, the integrated saturated map presented herein should be considered the initial reference map for melon. Most of the mapped markers contained in the reference map are polymorphic in diverse collection of germplasm, and thus are potentially transferrable to a broad array of genetic experimentation (e.g., integration of physical and genetic maps, colinearity analysis, map-based gene cloning, epistasis dissection, and marker-assisted selection). © 2011 Diaz et al; licensee BioMed Central Ltd.
Jenkins D.A.,Tropical Agricultural Research Station |
Kendra P.E.,U.S. Department of Agriculture |
Epsky N.D.,U.S. Department of Agriculture |
Montgomery W.S.,U.S. Department of Agriculture |
And 3 more authors.
Florida Entomologist | Year: 2012
Efforts to monitor and detect tephritid fruit flies in the genus Anastrepha currently involve MultiLure traps baited with two food-based synthetic attractants, ammonia (typically formulated as ammonium acetate or ammonium bicarbonate) and putrescine (1,4-diaminobutane). These baits are used in Central America, Florida, Texas, and the Caribbean to target/capture economically important Anastrepha spp. within each region. The efficacy of these baits varies by region and by species. Antennal responses to these compounds have been quantified for A. suspensa populations in Florida, but not elsewhere. This is the first report of antennal responses of Puerto Rican populations of A. obliqua and A. suspensa to the bait odors emitted from ammonium bicarbonate and putrescine lures. Responses to lure volatiles (tested separately and in combination), as measured by electroantennography (EAG), were dose dependant for both species and both sexes. Although the average response to ammonium bicarbonate in combination with putrescine was always numerically higher than responses to ammonium bicarbonate alone within a species and a sex, this result was never statistically significant. Males of A. obliqua were less sensitive than females, while males of A. suspensa were more sensitive than females to all volatiles and volatile mixtures, but these differences were not statistically significant at any dose. Female A. obliqua were more sensitive than A. suspensa females at all doses for all volatiles and all volatile mixtures, and these differences were statistically significant at the two highest doses of ammonium bicarbonate and ammonium bicarbonate plus putrescine. Our results are broadly similar with the electrophysiological studies conducted on Florida populations of A. suspensa, but there are important differences, most notably that the Florida study detected significantly lower responses by males than females to putrescine and ammonium bicarbonate plus putrescine. The implications of our results are discussed with respect to monitoring practices in different regions.