Interuniversity Institute for Marine Science
Interuniversity Institute for Marine Science
Holzman R.,Tel Aviv University |
Holzman R.,Interuniversity Institute for Marine science |
Collar D.C.,University of California at Santa Cruz |
Price S.A.,University of California at Davis |
And 3 more authors.
Proceedings of the Royal Society B: Biological Sciences | Year: 2012
Morphological diversification does not proceed evenly across the organism. Some body parts tend to evolve at higher rates than others, and these rate biases are often attributed to sexual and natural selection or to genetic constraints. We hypothesized that variation in the rates of morphological evolution among body parts could also be related to the performance consequences of the functional systems that make up the body. Specifically, we tested the widely held expectation that the rate of evolution for a trait is negatively correlated with the strength of biomechanical trade-offs to which it is exposed. We quantified the magnitude of trade-offs acting on the morphological components of three feeding-related functional systems in four radiations of teleost fishes. After accounting for differences in the rates of morphological evolution between radiations, we found that traits that contribute more to performance trade-offs tend to evolve more rapidly, contrary to the prediction. While ecological and genetic factors are known to have strong effects on rates of phenotypic evolution, this study highlights the role of the biomechanical architecture of functional systems in biasing the rates and direction of trait evolution. © 2011 The Royal Society.
Chindapol N.,University of Amsterdam |
Kaandorp J.A.,University of Amsterdam |
Cronemberger C.,University of Amsterdam |
Mass T.,Rutgers University |
And 2 more authors.
PLoS Computational Biology | Year: 2013
The growth of scleractinian corals is strongly influenced by the effect of water motion. Corals are known to have a high level of phenotypic variation and exhibit a diverse range of growth forms, which often contain a high level of geometric complexity. Due to their complex shape, simulation models represent an important option to complement experimental studies of growth and flow. In this work, we analyzed the impact of flow on coral's morphology by an accretive growth model coupled with advection-diffusion equations. We performed simulations under no-flow and uni-directional flow setup with the Reynolds number constant. The relevant importance of diffusion to advection was investigated by varying the diffusion coefficient, rather than the flow speed in Péclet number. The flow and transport equations were coupled and solved using COMSOL Multiphysics. We then compared the simulated morphologies with a series of Computed Tomography (CT) scans of scleractinian corals Pocillopora verrucosa exposed to various flow conditions in the in situ controlled flume setup. As a result, we found a similar trend associated with the increasing Péclet for both simulated forms and in situ corals; that is uni-directional current tends to facilitate asymmetrical growth response resulting in colonies with branches predominantly developed in the upstream direction. A closer look at the morphological traits yielded an interesting property about colony symmetry and plasticity induced by uni-directional flow. Both simulated and in situ corals exhibit a tendency where the degree of symmetry decreases and compactification increases in conjunction with the augmented Péclet thus indicates the significant importance of hydrodynamics. © 2013 Chindapol et al.
Mass T.,Interuniversity Institute for Marine science |
Mass T.,Hebrew University of Jerusalem |
Genin A.,Interuniversity Institute for Marine science |
Genin A.,Hebrew University of Jerusalem |
And 5 more authors.
Proceedings of the National Academy of Sciences of the United States of America | Year: 2010
Worldwide, many marine coastal habitats are facing rapid deterioration due in part to human-driven changes in habitat characteristics, including changes in flow patterns, a factor known to greatly affect primary production in corals, algae, and seagrasses. The effect of flow traditionally is attributed to enhanced influx of nutrients and dissolved inorganic carbon (DIC) across the benthic boundary layer from the water to the organism however, here we report that the organism's photosynthetic response to changes in the flow is nearly instantaneous, and that neither nutrients nor DIC limits this rapid response. Using microelectrodes, dual-pulse amplitude-modulated fluorometry, particle image velocimetry, and real time mass-spectrometry with the common scleractinian coral Favia veroni, the alga Gracilaria cornea, and the seagrass Halophila stipulacea, we show that this augmented photosynthesis is due to flow-driven enhancement of oxygen efflux from the organism to the water, which increases the affinity of the RuBisCO to CO2. No augmentation of photosynthesis was found in the absence of flow or when flow occurred, but the ambient concentration of oxygen was artificially elevated. We suggest that water motion should be considered a fundamental factor, equivalent to light and nutrients, in determining photosynthesis rates in marine benthic autotrophs.
Rubin M.,Bar - Ilan University |
Rubin M.,Interuniversity Institute for Marine science |
Berman-Frank I.,Bar - Ilan University |
Shaked Y.,Interuniversity Institute for Marine science |
Shaked Y.,Hebrew University of Jerusalem
Nature Geoscience | Year: 2011
Trichodesmium, a filamentous dinitrogen-fixing cyanobacterium, forms extensive blooms in nutrient-poor tropical and subtropical ocean waters. These cyano-bacteria contribute significantly to biological fixation of nitrogen from the atmosphere in these waters, and thereby fuel primary production and influence nutrient flow and the cycling of organic and inorganic matter 1,2. Trichodesmium blooms require large quantities of iron, which is partly supplied by the influx of wind-blown dust3. However, the processes and mechanisms associated with dust acquisition are poorly understood3-6. Here, we incubate natural populations and laboratory cultures of Trichodesmium with isotopically labelled iron oxides and desert dust, to determine how these cyanobacteria collect, process and use particulate iron. We show that, like most phytoplankton, Trichodesmium acquires only dissolved iron. However, unlike other studied phytoplankton, Trichodesmium accelerates the rate of iron dissolution from oxides and dust, through as yet unspecified cell-surface processes, and thereby increases cellular iron uptake rates. We show that natural puff (ball-shaped) colonies of Trichodesmium are particularly effective at dissolving dust and oxides, which we attribute to efficient dust trapping in their intricate colony morphology, followed by active shuttling and packaging of the dust within the colony core. We suggest that colony formation in Trichodesmium is an adaptive strategy that enhances iron acquisition from particulate sources such as dust. © 2011 Macmillan Publishers Limited. All rights reserved.
Zarubin M.,Interuniversity Institute for Marine science |
Zarubin M.,University of Oldenburg |
Belkin S.,Hebrew University of Jerusalem |
Ionescu M.,Hebrew University of Jerusalem |
And 2 more authors.
Proceedings of the National Academy of Sciences of the United States of America | Year: 2012
The benefits of bioluminescence for nonsymbiotic marine bacteria have not been elucidated fully. One of the most commonly cited explanations, proposed more than 30 y ago, is that bioluminescence augments the propagation and dispersal of bacteria by attracting fish to consume the luminous material. This hypothesis, based mostly on the prevalence of luminous bacteria in fish guts, has not been tested experimentally. Here we show that zooplankton that contacts and feeds on the luminescent bacterium Photobacterium leiognathi starts to glow, and demonstrate by video recordings that glowing individuals are highly vulnerable to predation by nocturnal fish. Glowing bacteria thereby are transferred to the nutritious guts of fish and zooplankton, where they survive digestion and gain effective means for growth and dispersal. Using bioluminescence as bait appears to be highly beneficial for marine bacteria, especially in food-deprived environments of the deep sea.
Shaked Y.,Interuniversity Institute for Marine science |
Shaked Y.,Hebrew University of Jerusalem |
Harris R.,Interuniversity Institute for Marine science |
Klein-Kedem N.,Interuniversity Institute for Marine science
Environmental Science and Technology | Year: 2010
The dynamics of hydrogen peroxide (H 2O 2) was investigated from December 2007 to October 2008 in the Gulf of Aqaba, which in the absence of H 2O 2 contribution from biological production, rain and runoff, turned out to be a unique natural photochemical laboratory. A distinct seasonal pattern emerged, with highest midday surface H 2O 2 concentrations in spring-summer (30-90 nM) as compared to winter (10-30 nM). Similarly, irradiation normalized net H 2O 2 formation rates obtained in concurrent ship-board experiments were faster in spring-summer than in winter. These seasonal patterns were attributed to changes in water characteristics, namely elevated spring-summer chromophoric dissolved organic matter (CDOM). The role of trace elements in H 2O 2 photoformation was studied by simultaneously measuring superoxide (O 2 -), Fe(II), and H 2O 2 formation and loss in ambient seawater and in the presence of superoxide dismutase, iron and copper. O 2 - was found to decay fast in the Gulf water, with a half-life of 15-28 s, primarily due to catalytic reactions with trace metals (predominantly copper). Hence, H 2O 2 formation in the Gulf involves metal-catalyzed O 2 - disproptionation. Added iron moderately lowered net H 2O 2 photoformation, probably due to its participation in Fe(II) oxidation, a process that may also modify H 2O 2 formation in situ. © 2010 American Chemical Society.
Post A.F.,Josephine Bay Paul Center for Comparative Molecular Biology and Evolution |
Post A.F.,Interuniversity Institute for Marine Science |
Rihtman B.,Hebrew University of Jerusalem |
Wang Q.,Interuniversity Institute for Marine Science
ISME Journal | Year: 2012
Nitrogen (N) physiology in the marine cyanobacterium Trichodesmium IMS101 was studied along with transcript accumulation of the N-regulatory gene ntcA and of two of its target genes: napA (nitrate assimilation) and nifH (N 2 fixation). N 2 fixation was impaired in the presence of nitrite, nitrate and urea. Strain IMS101 was capable of growth on these combined N sources at <2μM but growth rates declined at elevated concentrations. Assimilation of nitrate and urea was impaired in the presence of ammonium. Whereas ecologically relevant N concentrations (2-20μM) suppressed growth and assimilation, much higher concentrations were required to affect transcript levels. Transcripts of nifH accumulated under nitrogen-fixing conditions; these transcript levels were maintained in the presence of nitrate (100μM) and ammonium (20μM). However, nifH transcript levels were below detection at ammonium concentrations 20μM. napA mRNA was found at low levels in both N 2-fixing and ammonium-utilizing filaments, and it accumulated in filaments grown with nitrate. The positive effect of nitrate on napA transcription was abolished by ammonium additions of <200μM. This effect was restored upon addition of the glutamine synthetase inhibitor L-methionin-DL-sulfoximine. Surprisingly, ntcA transcript levels remained high in the presence of ammonium, even at elevated concentrations. These findings indicate that ammonium repression is decoupled from transcriptional activation of ntcA in Trichodesmium IMS101. © 2012 International Society for Microbial Ecology All rights reserved.
Dunckley J.F.,Stanford University |
Koseff J.R.,Stanford University |
Steinbuck J.V.,Harvard University |
Monismith S.G.,Stanford University |
Genin A.,Interuniversity Institute for Marine Science
Journal of Geophysical Research: Oceans | Year: 2012
Due to the many difficulties associated with measuring buoyancy flux directly in the field, parameterizations for the flux involving eddy diffusivities are commonly used. These parameterizations are often cast in terms of a mixing efficiency (), which itself is often assumed to be a constant throughout the water column (0.17-0.2). Alternatively, can be calculated in terms of turbulence parameters which attempt to capture the varying mixing dynamics throughout the water column. In this paper three separate parameterizations are used to calculate the eddy diffusivities in a dynamically evolving stratified water column in the Gulf of Aqaba. Furthermore, we use two different approaches for calculating by Ivey and Imberger (1991) and Shih et al. (2005) for these diffusivity parameterizations and compare the results obtained using each approach. Further work on the Shih et al. (2005) parameterization by D. Bouffard and L. Boegman (personal communication, 2011) has also been used in this analysis. While direct measurements of buoyancy flux are needed to validate the actual accuracy of the mixing efficiency parameterizations, we can make the following conclusions. First, we found that in some circumstances the eddy diffusivity models produce very different estimates from one another and the estimates are themselves sensitive to the choice of parameterization for . Second, when the stratification is weak and temperature variance is small, parameterizations involving calculations of the Thorpe scale, T as well as the turbulent Froude number and Reynolds numbers should be treated with great caution. Third, under the same circumstances, the Shih et al. (2005) approach for applied to the parameterization for vertical diffusivity seems to be the best vertical diffusivity (based on a comparison to ). © 2012. American Geophysical Union. All Rights Reserved.
Foran E.,Interuniversity Institute for Marine science |
Foran E.,Bar - Ilan University |
Weiner S.,Weizmann Institute of Science |
Fine M.,Interuniversity Institute for Marine science |
Fine M.,Bar - Ilan University
Scientific Reports | Year: 2013
The main source of calcium carbonate (CaCO3) in the ocean comes from the shells of calcifying planktonic organisms, but substantial amounts of CaCO3 are also produced in fish intestines. The precipitation of CaCO3 assists fish in intestinal water absorption and aids in whole body Ca2+ homeostasis. Here we report that the product formed in the intestinal lumen of the gilt-head seabream, Sparus aurata, is an amorphous calcium carbonate (ACC) phase. With FTIR spectroscopy and SEM imaging, our study shows that the fish-derived carbonates from S. aurata are maintained as a stable amorphous phase throughout the intestinal tract. Moreover, intestinal deposits contained up to 54 mol% Mg2+, the highest concentration yet reported in biogenic ACC. Mg is most likely responsible for stabilizing this inherently unstable mineral. The fish carbonates also displayed initial rapid dissolution when exposed to seawater, exhibiting a significant increase in carbonate concentration.
Polak O.,Ben - Gurion University of the Negev |
Polak O.,Interuniversity Institute for Marine science |
Shashar N.,Ben - Gurion University of the Negev
ICES Journal of Marine Science | Year: 2013
Polak, O., and Shashar, N. 2013. Economic value of biological attributes of artificial coral reefs - ICES Journal of Marine Science, 70: 904-912.Visitor appreciation of natural scenes such as coral reefs is well documented. However, what part the value of the biological component in these scenes plays in fostering people's enjoyment is unclear. Using the contingent valuation method (CVM), we examined divers' willingness to pay for changes in the fish and coral attributes over an artificial reef. Using image manipulations, different levels of community descriptors, such as richness, abundance, and biodiversity of corals and fish, were isolated, and the willingness to pay for proposed factors was examined. The results showed that divers were willing to contribute towards all increases in reef community attributes, and were partially able to discriminate between them. Biodiversity was the most valued index, while fish abundance was the least favoured. These results, which demonstrate that visitors understand the fundamentals that constitute a coral reef community and value its diversity, may help direct conservation efforts undertaken in the design of marine reserves and pre-planned artificial reefs. © 2013 International Council for the Exploration of the Sea.