Seattle, WA, United States
Seattle, WA, United States
SEARCH FILTERS
Time filter
Source Type

SEATTLE, Aug. 7, 2017 /PRNewswire/ -- Recognizing a need for better data visualization of multiplexed images in digital pathology, Glencoe Software, the innovative supplier of image data management solutions for biotech, pharma and publication industries, has released PathViewer 2.0....


Allan C.,University of Dundee | Allan C.,Glencoe Software | Burel J.-M.,University of Dundee | Burel J.-M.,Glencoe Software | And 24 more authors.
Nature Methods | Year: 2012

Data-intensive research depends on tools that manage multidimensional, heterogeneous datasets. We built OME Remote Objects (OMERO), a software platform that enables access to and use of a wide range of biological data. OMERO uses a server-based middleware application to provide a unified interface for images, matrices and tables. OMERO's design and flexibility have enabled its use for light-microscopy, high-content-screening, electron-microscopy and even non-image-genotype data. OMERO is open-source software, available at http://openmicroscopy.org/. © 2012 Nature America, Inc. All rights reserved.


Li S.,University of Dundee | Besson S.,University of Dundee | Blackburn C.,University of Dundee | Carroll M.,University of Dundee | And 19 more authors.
Methods | Year: 2016

High content screening (HCS) experiments create a classic data management challenge-multiple, large sets of heterogeneous structured and unstructured data, that must be integrated and linked to produce a set of "final" results. These different data include images, reagents, protocols, analytic output, and phenotypes, all of which must be stored, linked and made accessible for users, scientists, collaborators and where appropriate the wider community. The OME Consortium has built several open source tools for managing, linking and sharing these different types of data. The OME Data Model is a metadata specification that supports the image data and metadata recorded in HCS experiments. Bio-Formats is a Java library that reads recorded image data and metadata and includes support for several HCS screening systems. OMERO is an enterprise data management application that integrates image data, experimental and analytic metadata and makes them accessible for visualization, mining, sharing and downstream analysis. We discuss how Bio-Formats and OMERO handle these different data types, and how they can be used to integrate, link and share HCS experiments in facilities and public data repositories. OME specifications and software are open source and are available at https://www.openmicroscopy.org. © 2015 The Authors.


PubMed | University of Dundee and Glencoe Software
Type: Journal Article | Journal: Mammalian genome : official journal of the International Mammalian Genome Society | Year: 2015

Imaging data are used in the life and biomedical sciences to measure the molecular and structural composition and dynamics of cells, tissues, and organisms. Datasets range in size from megabytes to terabytes and usually contain a combination of binary pixel data and metadata that describe the acquisition process and any derived results. The OMERO image data management platform allows users to securely share image datasets according to specific permissions levels: data can be held privately, shared with a set of colleagues, or made available via a public URL. Users control access by assigning data to specific Groups with defined membership and access rights. OMEROs Permission system supports simple data sharing in a lab, collaborative data analysis, and even teaching environments. OMERO software is open source and released by the OME Consortium at www.openmicroscopy.org.


PubMed | University of Dundee and Glencoe Software
Type: | Journal: Methods (San Diego, Calif.) | Year: 2016

High content screening (HCS) experiments create a classic data management challenge-multiple, large sets of heterogeneous structured and unstructured data, that must be integrated and linked to produce a set of final results. These different data include images, reagents, protocols, analytic output, and phenotypes, all of which must be stored, linked and made accessible for users, scientists, collaborators and where appropriate the wider community. The OME Consortium has built several open source tools for managing, linking and sharing these different types of data. The OME Data Model is a metadata specification that supports the image data and metadata recorded in HCS experiments. Bio-Formats is a Java library that reads recorded image data and metadata and includes support for several HCS screening systems. OMERO is an enterprise data management application that integrates image data, experimental and analytic metadata and makes them accessible for visualization, mining, sharing and downstream analysis. We discuss how Bio-Formats and OMERO handle these different data types, and how they can be used to integrate, link and share HCS experiments in facilities and public data repositories. OME specifications and software are open source and are available at https://www.openmicroscopy.org.


Ome

Trademark
Glencoe Software and University of Dundee | Date: 2012-09-18

Computer software for use in connection with the storage and manipulation of biological and biomedical data; computer software downloadable from the Internet for use in connection with the storage and manipulation of biological and biomedical data; downloadable electronic publications in the nature of scientific journals, periodicals and newsletters relating to the storage and manipulation of biological and biomedical data. Business services relating to the storage and manipulation of biological and biomedical data, namely, management of biological and biomedical databases for business enterprises; data processing services relating to the storage and manipulation of biological and biomedical data. Design and development of computer software; computer programming; installation, maintenance and repair of computer software; design of computer websites and maintenance thereof; all the aforesaid services relating to storage and manipulation of biological and biomedical data.


Ome

Trademark
Glencoe Software | Date: 2016-03-22

Computer software for use in connection with the accessing, visualisation, analysis, management, publication, sharing, storage and manipulation of biological and biomedical data and images in the field of healthcare, life science and biomedical science; computer software downloadable from the Internet for use in connection with the accessing, visualisation, analysis, management, publication, sharing, storage and manipulation of biological and biomedical data and images in the field of healthcare, life science and biomedical science; data access and data management software tools for use in connection with the accessing, visualisation, analysis, management, publication, sharing, storage and manipulation of biological and biomedical data and images in the field of health care, life science and biomedical science; downloadable electronic publications in the nature of scientific journals, periodicals and newsletters relating to the accessing, visualisation, analysis, management, publication, sharing, storage and manipulation of biological and biomedical data and images in the field of health care, life science and biomedical science. Business services relating to the accessing, visualisation, analysis, management, publication, sharing, storage and manipulation of biological and biomedical data and images in the field of health care, life science and biomedical science, namely, management of biological and biomedical data and images for business enterprises; data processing services relating to the accessing, visualisation, analysis, management, publication, sharing, storage and manipulation of biological and biomedical data and images in the field of health care, life science and biomedical science; information, advisory and consultancy services in connection with the aforesaid services. Design and development of computer software, data access and data management software tools for use in connection with the accessing, visualisation, analysis, management, publication, sharing, storage and manipulation of biological and biomedical data and images in the field of health care, life science and biomedical science; computer programming; installation, maintenance and repair of computer software; design of computer websites and maintenance thereof, all relating to the accessing, visualisation, analysis, management, publication, sharing, storage and manipulation of biological and biomedical data and images in the field of health care, life science and biomedical science; information, advisory and consultancy services in connection with the aforesaid services. Licensing of computer software for use in connection with the accessing, visualisation, analysis, management, publication, sharing, storage and manipulation of biological and biomedical data and images in the field of healthcare, life science and biomedical science; information, advisory and consultancy services in connection with the aforesaid services.


Trademark
Glencoe Software | Date: 2012-12-11

Computer software for use in connection with the storage and manipulation of biological and biomedical data; computer software downloadable from the Internet for use in connection with the storage and manipulation of biological and biomedical data; downloadable electronic publications in the nature of scientific journals, periodicals and newsletters relating to the storage and manipulation of biological and biomedical data. Business services relating to the storage and manipulation of biological and biomedical data, namely, management of biological and biomedical databases for business enterprises; data processing services relating to the storage and manipulation of biological and biomedical data. Design and development of computer software; computer programming; installation, maintenance and repair of computer software; design of computer websites and maintenance thereof; all the aforesaid services relating to storage and manipulation of biological and biomedical data.


PNAS Selects Glencoe Softwares Data InPress for streaming in-line video Seattle, WA USA August 26, 2014 Glencoe Software, Inc. is pleased to announce that The Proceedings of the National Academy of Sciences (www ...

Loading Glencoe Software collaborators
Loading Glencoe Software collaborators