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Hinxton, United Kingdom

Parkinson H.,Functional Genomics Team | Sarkans U.,Functional Genomics Team | Kolesnikov N.,Functional Genomics Team | Abeygunawardena N.,Functional Genomics Team | And 18 more authors.
Nucleic Acids Research | Year: 2011

The ArrayExpress Archive (http://www.ebi.ac.uk/ arrayexpress) is one of the three international public repositories of functional genomics data supporting publications. It includes data generated by sequencing or array-based technologies. Data are submitted by users and imported directly from the NCBI Gene Expression Omnibus. The ArrayExpress Archive is closely integrated with the Gene Expression Atlas and the sequence databases at the European Bioinformatics Institute. Advanced queries provided via ontology enabled interfaces include queries based on technology and sample attributes such as disease, cell types and anatomy. © The Author(s) 2010. Source

Rustici G.,Functional Genomics Team | Kolesnikov N.,Functional Genomics Team | Brandizi M.,Functional Genomics Team | Burdett T.,Functional Genomics Team | And 22 more authors.
Nucleic Acids Research | Year: 2013

The ArrayExpress Archive of Functional Genomics Data (http://www.ebi.ac.uk/ arrayexpress) is one of three international functional genomics public data repositories, alongside the Gene Expression Omnibus at NCBI and the DDBJ Omics Archive, supporting peer-reviewed publications. It accepts data generated by sequencing or array-based technologies and currently contains data from almost a million assays, from over 30 000 experiments. The proportion of sequencing-based submissions has grown significantly over the last 2 years and has reached, in 2012, 15% of all new data. All data are available from ArrayExpress in MAGE-TAB format, which allows robust linking to data analysis and visualization tools, including Bioconductor and GenomeSpace. Additionally, R objects, for micro-array data, and binary alignment format files, for sequencing data, have been generated for a significant proportion of ArrayExpress data. © The Author(s) 2012. Source

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