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Villeurbanne, France

Delmon V.,CREATIS
Physics in medicine and biology | Year: 2013

Sliding motion is a challenge for deformable image registration because it leads to discontinuities in the sought deformation. In this paper, we present a method to handle sliding motion using multiple B-spline transforms. The proposed method decomposes the sought deformation into sliding regions to allow discontinuities at their interfaces, but prevents unrealistic solutions by forcing those interfaces to match. The method was evaluated on 16 lung cancer patients against a single B-spline transform approach and a multi B-spline transforms approach without the sliding constraint at the interface. The target registration error (TRE) was significantly lower with the proposed method (TRE = 1.5 mm) than with the single B-spline approach (TRE = 3.7 mm) and was comparable to the multi B-spline approach without the sliding constraint (TRE = 1.4 mm). The proposed method was also more accurate along region interfaces, with 37% less gaps and overlaps when compared to the multi B-spline transforms without the sliding constraint. Source


Boussel L.,CREATIS | Boussel L.,University of Lyon | Coulon P.,Philips | Thran A.,Philips | And 4 more authors.
British Journal of Radiology | Year: 2014

Objective: To evaluate the capabilities of photon counting spectral CT to differentiate components of coronary atherosclerotic plaque based on differences in spectral attenuation and iodine-based contrast agent concentration.Methods: 10 calcified and 13 lipid-rich non-calcified histologically demonstrated atheromatous plaques from post-mortem human coronary arteries were scanned with a photon counting spectral CT scanner. Individual photons were counted and classified in one of six energy bins from 25 to 70 keV. Based on a maximum likelihood approach, maps of photoelectric absorption (PA), Compton scattering (CS) and iodine concentration (IC) were reconstructed. Intensity measurements were performed on each map in the vessel wall, the surrounding perivascular fat and the lipid-rich and the calcified plaques. PA and CS values are expressed relative to pure water values. A comparison between these different elements was performed using Kruskal-Wallis tests with pairwise post hoc Mann-Whitney U-tests and Sidak p-value adjustments.Results: Results for vessel wall, surrounding perivascular fat and lipid-rich and calcified plaques were, respectively, 1.19±0.09, 0.73±0.05, 1.08±0.14 and 17.79±6.70 for PA; 0.96±0.02, 0.83±0.02, 0.91±0.03 and 2.53±0.63 for CS; and 83.3±10.1, 37.6±8.1, 55.2±14.0 and 4.9± 20.0mmoll-1 for IC, with a significant difference between all tissues for PA, CS and IC (p < 0.012).Conclusion: This study demonstrates the capability of energy-sensitive photon counting spectral CT to differentiate between calcifications and iodine-infused regions of human coronary artery atherosclerotic plaque samples by analysing differences in spectral attenuation and iodine-based contrast agent concentration.Advances in knowledge: Photon counting spectral CT is a promising technique to identify plaque components by analysing differences in iodine-based contrast agent concentration, photoelectric attenuation and Compton scattering. © 2014 The Authors. Source


Li H.,CREATIS | Robini M.C.,CREATIS | Yang F.,Beijing Jiaotong University | Magnin I.,CREATIS | Zhu Y.,CREATIS
IEEE Transactions on Biomedical Engineering | Year: 2014

Diffusion-tensor imaging allows noninvasive assessment of the myocardial fiber architecture, which is fundamental in understanding the mechanics of the heart. In this context, tractography techniques are often used for representing and visualizing cardiac fibers, but their output is only qualitative. We introduce here a new framework toward a more quantitative description of the cardiac fiber architecture from tractography results. The proposed approach consists in taking three-dimensional (3-D) fiber tracts as inputs, and then unfolding these fibers in the Euclidean plane under local isometry constraints using semidefinite programming. The solution of the unfolding problem takes the form of a Gram matrix which defines the two-dimensional (2-D) embedding of the fibers and whose spectrum provides quantitative information on their organization. Experiments on synthetic and real data show that unfolding makes it easier to observe and to study the cardiac fiber architecture. Our conclusion is that 2-D embedding of cardiac fibers is a promising approach to supplement 3-D rendering for understanding the functioning of the heart. © 2014 IEEE. Source


Wardziak T.,CNRS Ecology of Natural and Anthropized Hydrosystems Laboratory | Oxarango L.,Joseph Fourier University | Valette S.,CREATIS | Mahieu-Williame L.,CREATIS | Joly P.,CNRS Ecology of Natural and Anthropized Hydrosystems Laboratory
Canadian Journal of Zoology | Year: 2014

Magnetic resonance imaging (MRI) based 3D reconstructions were used to derive accurate quantitative data on body volume and functional skin surface areas involved in water transfer in the Palmate Newt (Lissotriton helveticus (Razoumovsky, 1789)). Body surface area can be functionally divided into evaporative surface area that interacts with the atmosphere and controls the transepidermal evaporative water loss (TEWL); ventral surface area in contact with the substratum that controls transepidermal water absorption (TWA); and skin surface area in contact with other skin surfaces when amphibians adopt water-conserving postures. We generated 3D geometries of the newts via volume-rendering by a "segmentation" process carried out using a graph-cuts algorithm and a Web-based interface. The geometries reproduced the two postures adopted by the newts, i.e., an I-shaped posture characterized by a straight body without tail coiling and an S-shaped posture where the body is huddled up with the tail coiling along it. As a guide to the quality of the surface area estimations, we compared measurements of TEWL rates between living newts and their agar replicas (reproducing their two postures) at 20 °C and 60% relative humidity. Whereas the newts did not show any physiological adaptations to restrain evaporation, they expressed an efficient S-shaped posture with a resulting water economy of 22.9%, which is very close to the 23.6% reduction in evaporative surface area measured using 3D analysis. Source


Pinto M.,University of Lyon | Pinto M.,UniversiteLyon 1 | Pinto M.,French National Center for Scientific Research | Dauvergne D.,University of Lyon | And 6 more authors.
Physics in Medicine and Biology | Year: 2015

Hadrontherapy is an innovative radiation therapy modality for which one of the main key advantages is the target conformality allowed by the physical properties of ion species. However, in order to maximise the exploitation of its potentialities, online monitoring is required in order to assert the treatment quality, namely monitoring devices relying on the detection of secondary radiations. Herein is presented a method based on Monte Carlo simulations to optimise a multi-slit collimated camera employing time-of-flight selection of prompt-gamma rays to be used in a clinical scenario. In addition, an analytical tool is developed based on the Monte Carlo data to predict the expected precision for a given geometrical configuration. Such a method follows the clinical workflow requirements to simultaneously have a solution that is relatively accurate and fast. Two different camera designs are proposed, considering different endpoints based on the trade-off between camera detection efficiency and spatial resolution to be used in a proton therapy treatment with active dose delivery and assuming a homogeneous target. © 2014 Institute of Physics and Engineering in Medicine. Source

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