CNRS Evolution, Ecology, and Paleonthology Laboratory

Lille, France

CNRS Evolution, Ecology, and Paleonthology Laboratory

Lille, France
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The Lower Devonian siliciclastic series of Paliseul and Wihéries, in the Ardenne Massif, have delivered vertebrate remains. Paliseul rests on an equivalent of the St Hubert Formation, late Lochkovian in age; Wihéries rests on an equivalent of the Bois d’Ausse Formation, late Pragian in age. The vertebrates collected in these localities are mainly pteraspidiform heterostracans. The revision of the specimens collected in the Racheneur quarry, NW of Wihéries, allows the redescription of Europrotaspis? wiheriesiensis. It is characterized, inter alia, by the morphology of its dorsal shield with two long arched branchial plates. However, its cornual plates are unknown. It is endemic to the Ardenne area. Recently collected specimens from quarries north of Paliseul are attributed to Althaspis leachi, as well as the older specimens collected in the1950s; they all correspond to badly preserved internal moulds of mostly dorsal shields. A. leachi is also known from Wihéries; it seems that the latter material is of not fully grown individuals. Additionally, an interesting dorsal shield with apparently a small multi-element cornual plate has been collected in one of the Paliseul quarries (cf. Europrotaspis? wiheriesiensis), as well as a partially articulated acanthodian. The occurrence of Rhinopteraspis dunensis in both an ancient quarry east of Wihéries, and in the upper levels of the Racheneur quarry, NW of Wihéries, is confirmed. © 2015, Geologica Belgica. All rights reserved.

Servais T.,CNRS Evolution, Ecology, and Paleonthology Laboratory | Martin R.E.,University of Delaware | Nutzel A.,GeoBio Center
Review of Palaeobotany and Palynology | Year: 2016

With few exceptions, the impact of the evolution of the terrestrial biosphere on the evolution of the marine sphere has been largely ignored. So too has the resulting complementary role of marine photosynthesis and primary productivity in the evolution of atmospheric and oceanic pCO2 and pO2 in response to land–sea interactions. The Early-Middle Palaeozoic invasion of the continents by plants is considered to be responsible for major changes in the carbon cycle and changing values of pO2 and pCO2 in the atmosphere. Some authors have also related the ‘terrestrialisation process’ to the rapid Late Devonian decline of organic-walled phytoplankton (acritarch) diversity. The stratigraphical interval between the Carboniferous and early Triassic, i.e., the late Palaeozoic–Early Mesozoic, is a time period with a very low diversity of organic-walled phytoplankton, and this period was therefore considered by some authors as corresponding to a ‘Phytoplankton Blackout.’ It has been argued that the marine food web during this interval was related to the invasion of land by plants, suggesting that a reduced nutrient input to the ocean by runoff decreased the number of acritarchs and primary production in the marine realm. Subsequently, it has also been suggested that the Phanerozoic phytoplankton record can be correlated with models of pCO2 with high acritarch diversities corresponding to periods of high pCO2. Conversely, the spread of terrestrial forests may have increased weathering rates via deeper rooting, releasing increased amounts of nutrients to the oceans while also increasing atmospheric pCO2. The present paper critically reviews the proposed scenarios and discusses the possible relations between terrestrial and marine ecosystems, in particular the possible impact of the terrestrialisation process on marine phytoplankton. The known Palaeozoic fossil record of the phytoplankton is incomplete to a high degree. It consists almost entirely on the organic-walled fraction, because calcareous and siliceous phytoplankton remain almost unrecorded. In addition, the fossil record solely provides information about the diversity of cysts, but not necessarily precise data of the number and quality of the cyst-producing phytoplanktonic organisms. Taking into consideration that only few modern phytoplankton taxa produce cysts, the absence of cysts in the fossil record does not necessarily imply the absence of phytoplankton. In contrast, the presence of planktotrophic larvae of marine invertebrate organisms indicates that phytoplankton must have been present in the Late Palaeozoic oceans, and the marine trophic web did indeed not collapse in the Late Devonian. The presence and abundance of filter feeding and suspension feeding benthic organisms such as brachiopods, crinoids, sponges and corals also suggest sufficient primary production in the Late Palaeozoic seas. It can be concluded that, although the phytoplankton is largely absent from the fossil record, a ‘phytoplankton blackout’ is unrealistic. A major remaining question is to understand why the cyst production decreased after the Late Devonian and why this might be correlated to changes of pCO2. © 2015 Elsevier B.V.

Macke E.,Catholic University of Leuven | Tasiemski A.,CNRS Evolution, Ecology, and Paleonthology Laboratory | Massol F.,CNRS Evolution, Ecology, and Paleonthology Laboratory | Callens M.,Catholic University of Leuven | Decaestecker E.,Catholic University of Leuven
Oikos | Year: 2017

The recent emergence of powerful genomic tools, such as high-throughput genomics, transcriptomics and metabolomics, combined with the study of gnotobiotic animals, have revealed overwhelming impacts of gut microbiota on the host phenotype. In addition to provide their host with metabolic functions that are not encoded in its own genome, evidence is accumulating that gut symbionts affect host traits previously thought to be solely under host genetic control, such as development and behavior. Metagenomics and metatranscriptomics studies further revealed that gut microbial communities can rapidly respond to changes in host diet or environmental conditions through changes in their structural and functional profiles, thus representing an important source of metabolic flexibility and phenotypic plasticity for the host. Hence, gut microbes appear to be an important factor affecting host ecology and evolution which is, however, not accounted for in life-history theory, or in classic population genetics, ecological and eco-evolutionary models. In this forum, we shed new light on life history and eco-evolutionary dynamics by viewing these processes through the lens of host– microbiota interactions. We follow a three-level approach. First, current knowledge on the role of gut microbiota in host physiology and behavior points out that gut symbionts can be a crucial medium of life-history strategies. Second, the particularity of the microbiota is based on its multilayered structure, composed of both a core microbiota, under host genetic and immune control, and a flexible pool of microbes modulated by the environment, which differ in constraints on their maintenance and in their contribution to host adaptation. Finally, gut symbionts can drive the ecological and evolutionary dynamics of their host through effects on individual, population, community and ecosystem levels. In conclusion, we highlight some future perspectives for integrative studies to test hypotheses on life history and eco-evolutionary dynamics in light of the gut microbiota. © 2016 The Authors

Brachi B.,University of Chicago | Meyer C.G.,University of Chicago | Villoutreix R.,CNRS Evolution, Ecology, and Paleonthology Laboratory | Platt A.,Temple University | And 4 more authors.
Proceedings of the National Academy of Sciences of the United States of America | Year: 2015

The "mustard oil bomb" is a major defense mechanism in the Brassicaceae, which includes crops such as canola and the model plant Arabidopsis thaliana. These plants produce and store blends of amino acid-derived secondary metabolites called glucosinolates. Upon tissue rupture by natural enemies, the myrosinase enzyme hydrolyses glucosinolates, releasing defense molecules. Brassicaceae display extensive variation in the mixture of glucosinolates that they produce. To investigate the genetics underlying natural variation in glucosinolate profiles, we conducted a large genomewide association study of 22 methionine-derived glucosinolates using A. thaliana accessions from across Europe. We found that 36% of among accession variation in overall glucosinolate profile was explained by genetic differentiation at only three known loci from the glucosinolate pathway. Glucosinolate-related SNPs were up to 490-fold enriched in the extreme tail of the genome-wide FST scan, indicating strong selection on loci controlling this pathway. Glucosinolate profiles displayed a striking longitudinal gradient with alkenyl and hydroxyalkenyl glucosinolates enriched in the West. We detected a significant contribution of glucosinolate loci toward general herbivore resistance and lifetime fitness in common garden experiments conducted in France, where accessions are enriched in hydroxyalkenyls. In addition to demonstrating the adaptive value of glucosinolate profile variation, we also detected long-distance linkage disequilibrium at two underlying loci, GS-OH and GS-ELONG. Locally cooccurring alleles at these loci display epistatic effects on herbivore resistance and fitness in ecologically realistic conditions. Together, our results suggest that natural selection has favored a locally adaptive configuration of physically unlinked loci in Western Europe.

Ozkan R.,Turkish Petroleum Corporation | Vachard D.,CNRS Evolution, Ecology, and Paleonthology Laboratory
Revue de Micropaleontologie | Year: 2015

A complete Devonian sequence is well exposed in the eastern Taurides, forming more than 1000 m-thick succession of carbonate and siliciclastic sediments. The carbonate succession, stratigraphically ranging from Middle Devonian to early Late Devonian and mostly comprising limestones, dolomitic limestones and reefal limestones, contains abundant and diverse assemblages of foraminifers, corals, stromatoporoids, calcareous algae, bivalves, brachiopods, ostracods, and conodonts. The limestone samples collected from a more closely sampled stratigraphic section have been investigated for their foraminiferal content. The micropalaeontological analyses carried out on these samples have revealed the presence of an early Frasnian foraminiferal assemblage including predominantly unilocular parathuramminid species and multilocular forms of the genera Nanicella, Paratikhinella and Semitextularia? and further indicated the presence of a new genus and a new species Halevikia deveciae n. gen. n. sp. which appears as an important phylogenetic and stratigraphic transitional taxon between the families Baituganellidae n. fam. and Tournayellinidae, the phylogenetic potentiality of which during the Late Devonian is currently probably underestimated. © 2015 Elsevier Masson SAS.

Vekemans X.,CNRS Evolution, Ecology, and Paleonthology Laboratory | Poux C.,CNRS Evolution, Ecology, and Paleonthology Laboratory | Goubet P.M.,CNRS Evolution, Ecology, and Paleonthology Laboratory | Castric V.,CNRS Evolution, Ecology, and Paleonthology Laboratory
Journal of Evolutionary Biology | Year: 2014

Evolutionary transitions between mating systems have occurred repetitively and independently in flowering plants. One of the most spectacular advances of the recent empirical literature in the field was the discovery of the underlying genetic machinery, which provides the opportunity to retrospectively document the scenario of the outcrossing to selfing transitions in a phylogenetic perspective. In this review, we explore the literature describing patterns of polymorphism and molecular evolution of the locus controlling self-incompatibility (S-locus) in selfing species of the Brassicaceae family in order to document the transition from outcrossing to selfing, a retrospective approach that we describe as the 'mating system genes approach'. The data point to strikingly contrasted scenarios of transition from outcrossing to selfing. We also perform original analyses of the fully sequenced genomes of four species showing self-compatibility, to compare the orthologous S-locus region with that of functional S-locus haplotypes. Phylogenetic analyses suggest that all species we investigated evolved independently towards loss of self-incompatibility, and in most cases almost intact sequences of either of the two S-locus genes suggest that these transitions occurred relatively recently. The S-locus region in Aethionema arabicum, representing the most basal lineage of Brassicaceae, showed unusual patterns so that our analysis could not determine whether self-incompatibility was lost secondarily, or evolved in the core Brassicaceae after the split with this basal lineage. Although the approach we detail can only be used when mating system genes have been identified in a clade, we suggest that its integration with phylogenetic and population genetic approaches should help determine the main routes of this predominant mating system shift in plants. © 2014 European Society For Evolutionary Biology.

Touzet P.,CNRS Evolution, Ecology, and Paleonthology Laboratory | Meyer E.H.,Max Planck Institute of Molecular Plant Physiology
Mitochondrion | Year: 2014

Cytoplasmic male sterility (CMS) is a common feature encountered in plant species. It is the result of a genomic conflict between the mitochondrial and the nuclear genomes. CMS is caused by mitochondrial encoded factors which can be counteracted by nuclear encoded factors restoring male fertility. Despite extensive work, the molecular mechanism of male sterility still remains unknown. Several studies have suggested the involvement of respiration on the disruption of pollen production through an energy deficiency. By comparing recent works on CMS and respiratory mutants, we suggest that the "ATP hypothesis" might not be as obvious as previously suggested. © 2014 Elsevier B.V. and Mitochondria Research Society.

Touzet P.,CNRS Evolution, Ecology, and Paleonthology Laboratory
Advances in Botanical Research | Year: 2012

Gynodioecy is a breeding system frequently encountered in flowering plants. It consists of the co-occurrence of hermaphrodites and females in populations. Gynodioecy is generally under nuclear-cytoplasmic control, which involves mitochondrial sterilizing genes and nuclear genes that restore male fertility. Sterilizing mitochondrial genomes have been described in crops in which cytoplasmic male sterility (CMS) is cryptic, i.e. not maintained in populations of wild relative species. However, the isolation of sterilizing genes has led to the definition of a profile that can help to find candidate genes in CMSs found in gynodioecious species. We discuss the expected effect of two alternative evolutionary dynamics of gynodioecy on mitochondrial diversity and describe the pattern of diversity observed at the gene and genome levels. On the basis of whole sequence analyses of mitochondrial genomes in beet and maize, we suggest that CMS mitochondrial genomes might exhibit a faster evolution rate, and a clue to its cause might be found in male sterility itself. © 2012 Elsevier Ltd.

Roux C.,CNRS Evolution, Ecology, and Paleonthology Laboratory | Pauwels M.,CNRS Evolution, Ecology, and Paleonthology Laboratory | Ruggiero M.-V.,Stazione Zoologica Anton Dohrn | Charlesworth D.,University of Edinburgh | And 2 more authors.
Molecular Biology and Evolution | Year: 2013

Balancing selection can maintain different alleles over long evolutionary times. Beyond this direct effect on the molecular targets of selection, balancing selection is also expected to increase neutral polymorphism in linked genome regions, in inverse proportion to their genetic map distances from the selected sites. The genes controlling plant self-incompatibility are subject to one of the strongest forms of balancing selection, and they show clear signatures of balancing selection. The genome region containing those genes (the S-locus) is generally described as nonrecombining, and the physical size of the region with low recombination has recently been established in a few species. However, the size of the region showing the indirect footprints of selection due to linkage to the S-locus is only roughly known. Here, we improved estimates of this region by surveying synonymous polymorphism and estimating recombination rates at 12 flanking region loci at known physical distances from the S-locus region boundary, in two closely related self-incompatible plants Arabidopsis halleri and A. lyrata. In addition to studying more loci than previous studies and using known physical distances, we simulated an explicit demographic scenario for the divergence between the two species, to evaluate the extent of the genomic region whose diversity departs significantly from neutral expectations. At the closest flanking loci, we detected signatures of both recent and ancient indirect effects of selection on the S-locus flanking genes, finding ancestral polymorphisms shared by both species, as well as an excess of derived mutations private to either species. However, these effects are detected only in a physically small region, suggesting that recombination in the flanking regions is sufficient to quickly break up linkage disequilibrium with the S-locus. Our approach may be useful for distinguishing cases of ancient versus recently evolved balancing selection in other systems. © The Author(s) 2012.

Leducq J.-B.,Montpellier University | Leducq J.-B.,CNRS Evolution, Ecology, and Paleonthology Laboratory
G3 (Bethesda, Md.) | Year: 2014

Self-incompatibility (SI) is a genetic system that prevents self-fertilization in many Angiosperms. Although plants from the Brassicaceae family present an apparently unique SI system that is ancestral to the family, investigations at the S-locus responsible for SI have been mostly limited to two distinct lineages (Brassica and Arabidopsis-Capsella, respectively). Here, we investigated SI in a third deep-branching lineage of Brassicaceae: the tribe Biscutelleae. By coupling sequencing of the SI gene responsible for pollen recognition (SRK) with phenotypic analyses based on controlled pollinations, we identified 20 SRK-like sequences functionally linked to 13 S-haplotypes in 21 individuals of Biscutella neustriaca and 220 seedlings. We found two genetic and phylogenetic features of SI in Biscutelleae that depart from patterns observed in the reference Arabidopsis clade: (1) SRK-like sequences cluster into two main phylogenetic lineages interspersed within the many SRK lineages of Arabidopsis; and (2) some SRK-like sequences are transmitted by linked pairs, suggesting local duplication within the S-locus. Strikingly, these features also were observed in the Brassica clade but probably evolved independently, as the two main SRK clusters in Biscutella are distinct from those in Brassica. In the light of our results and of what has been previously observed in other Brassicaceae, we discuss the ecological and evolutionary implications on SI plant populations of the high diversity and the complex dominance relationships we found at the S-locus in Biscutelleae. Copyright © 2014 Leducq et al.

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