Central Laboratory of Fujian Academy of Agricultural science

Fuzhou, China

Central Laboratory of Fujian Academy of Agricultural science

Fuzhou, China
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Liu Y.,Central Laboratory of Fujian Academy of Agricultural science | Shang X.,Novogene Bioinformatics Technology Co. | Zeng R.,Third Institute of Oceanography
Marine Genomics | Year: 2015

Shewanella sp. YQH10 isolated from mangrove sediment, was a novel species of Shewanella, which has the ability to degrade acetaldehyde. Here, we present an annotated draft genome sequence of Shewanella sp. YQH10, which contains 4,215,794. bp with a G + C content of 48.1%. This information regarding the genetic basis of this bacterium can greatly advance our understanding of the physiology of this species. © 2014 Elsevier B.V.


Wang R.,Ningbo University | Wang R.,Third Institute of Oceanography | Ren C.,China Shipbuilding Industry Corporation CSIC | Huang N.,China Shipbuilding Industry Corporation CSIC | And 2 more authors.
Marine Genomics | Year: 2015

Pseudomonas oleovorans MGY01 isolated from the deep-sea water of the South China Sea could effectively degrade malachite green. The draft genome of P. oleovorans MGY01 was sequenced and analyzed to gain insights into its efficient metabolic pathway for degrading malachite green. The data obtained revealed 109 Contigs (N50; 128,269bp) with whole genome size of 5,201,892bp. The draft genome sequence of strain MGY01 will be helpful in studying the genetic pathways involved in the degradation of malachite green. © 2014 Elsevier B.V.


Liu Y.,Central Laboratory of Fujian Academy of Agricultural science | Yi Z.,Third Institute of Oceanography | Cai Y.,Inspection and Quarantine Technology Center | Zeng R.,Third Institute of Oceanography
Marine Genomics | Year: 2015

Flammeovirga sp. OC4 was isolated from seawater sample of the South China Sea using the method of in-situ-enrichment, which has the ability to degrade algal polysaccharides. Colonies are reddish orange in the exponential growth phase and turn white in the late stationary growth phase, which is the indicator of the bacterial death. Here, we present an annotated draft genome sequence of Flammeovirga sp. OC4, which contains 8,069,312. bp with a G. +. C content of 34.8%. This information regarding the genetic basis of this bacterium can greatly advance our understanding of algal polysaccharides-degrading mechanism and the physiology of this species. © 2015 Elsevier B.V.


Yan S.,Central Laboratory of Fujian Academy of Agricultural science | Yan S.,Fujian Key Laboratory of Precision Measurement of Agricultural science | Lin X.,Central Laboratory of Fujian Academy of Agricultural science | Lin X.,Fujian Key Laboratory of Precision Measurement of Agricultural science | And 4 more authors.
Journal of Chinese Institute of Food Science and Technology | Year: 2013

Objective: The paper aims at analyzing amino acid contents and composition of foot muscle and shell of RITAI Haliotis diversicolor and their reciprocal hybrids. Method: The amino acids were hydrolyzed by acid or base, extracted by sulfosalicylic acid, and at last it is estimated by the score of ratio coefficient of amino acid. Result: The foot muscle of three kinds of Haliotis diversicolor contains eighteen kinds of proteinaceous amino acid and three kinds of nonprotein amino acid. The SRCAA of foot muscle of three kinds of Haliotis diversicolors is all over 80%, and their E/T and E/N are consistent with the FAO/WHO proteinaceous model. The contents of TAA, EAA and other functional amino acids of foot muscle in Dongyou No.1 and Japan population are obviously higher than those of Taiwan population (P<0.05). The protein of shell of Haliotis diversicolors contain eighteen kinds of amino acid. The contents of TAA and EAA of shell in Dongyou No.1 are higher than those of its parents. Conclusion: The foot muscle protein of Haliotis diversicolor has high nutritional value and contains variety of amino acid, which is in reasonable proportions. It is the best source of high-quality protein. The amino acid nutrition of foot muscle and shell of Dongyou No.1 can be improved by hybridization and have some qualities that are superior to its parents.


Zeng Y.-X.,Polar Research Institute of China | Yu Y.,Polar Research Institute of China | Liu Y.,Central Laboratory of Fujian Academy of Agricultural science | Li H.-R.,Polar Research Institute of China
International Journal of Systematic and Evolutionary Microbiology | Year: 2016

A Gram-stain-negative, non-motile, non-spore-forming, non-pigmented, oxidase-and catalase-positive bacterial strain, designated BIc20019T, was isolated from the ice core of Austre Lovénbreen in Ny-Ålesund, Svalbard. The temperature and NaCl ranges for growth were 4-34 ºC (optimum, 25-29 ºC) and 0-8% (w/v) (optimum, 2-4 %). Analysis of the 16S rRNA gene sequence indicated that strain BIc20019T belonged to the genus Psychrobacter and was closely related to Psychrobacter arcticus 273-4T, Psychrobacter cryohalolentis K5T, ‘Psychrobacter fjordensis’ BSw21516B, Psychrobacter fozii LMG 21280T, Psychrobacter luti LMG 21276T and Pyschrobacter okhotskensis MD17T at greater than 99% similarity. Phylogenetic analysis based on gyrB gene sequences revealed highest similarity (93.6%) to P. okhotskensis MD17T. However, DNA hybridization experiments revealed a low level of DNA-DNA relatedness (˂59 %) between strain BIc20019T and its closest relatives. Strain BIc20019T contained ubiquinone-8 (Q-8) as the predominant respiratory quinone, and C18:1ω9c and summed feature 3 (C16:1ω7c and/or iso-C15:0 2-OH) as the major fatty acids. It had a DNA G+C content of 46.3 mol%. The polar lipid profile of strain BIc20019T was mainly composed of phosphatidylglycerol, phosphatidylethanolamine and diphosphatidylglycerol. Owing to the differences in phenotypic and chemotaxonomic characteristics, phylogenetic analysis based on 16S rRNA gene and gyrB gene sequences, and DNA-DNA relatedness data, the isolate merits classification within a novel species for which the name Psychrobacter glaciei sp. nov. is proposed. The type strain is BIc20019T (=KCTC 42280T=CCTCC AB 2014019T). © 2016 IUMS.


PubMed | Inspection & Quarantine Technology Center, Third Institute of Oceanography and Central Laboratory of Fujian Academy of Agricultural science
Type: | Journal: Marine genomics | Year: 2015

Flammeovirga sp. OC4 was isolated from seawater sample of the South China Sea using the method of in-situ-enrichment, which has the ability to degrade algal polysaccharides. Colonies are reddish orange in the exponential growth phase and turn white in the late stationary growth phase, which is the indicator of the bacterial death. Here, we present an annotated draft genome sequence of Flammeovirga sp. OC4, which contains 8,069,312bp with a G+C content of 34.8%. This information regarding the genetic basis of this bacterium can greatly advance our understanding of algal polysaccharides-degrading mechanism and the physiology of this species.

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