RNA interference: Potential uses on functional genomics and genetic control of Hypothenemus hampei (Coleoptera: Scolytinae) [ARN interferente: Potenciales usos en genómica funcional y control genético de hypothenemus hampei (coleoptera: Scolytinae)]
Aguilerag C.,National University of Colombia |
Padillah B.E.,Bacteriologa |
Florezr C.P.,CENICAFE |
Rubiog J.D.,Entomologia |
Revista Colombiana de Entomologia | Year: 2011
Eukaryotic organisms, including insects, have a mechanism for specific gene silencing by short sequences of double-stranded RNA (dsRNA), such a process is known as RNA interference (RNAi). The objective of this research was to follow up this technique to screen candidate genes for the genetic control of the coffee berry borer Hypothenemus hampei. A methodology of feeding by oral drops containing different dsRNAs and dsRNAs' dosages that were placed in the preoral cavity of first instar larvae was used. Then, the larvae were reared on an artificial diet supplemented with the respective dsRNA. Previously, we verified the effectiveness of the dsRNA feeding using two control strategies: a) intake of a fluorescent compound (Calcofluor™) and b) intake of a commercial mixture of protease inhibitors. The genes coding for mannanase, xylanase, cytochrome P450 mono-oxygenase (two genes), ATPase D, α-tubulin and actin, expressed in the coffee berry borer, were selected for silencing. We found that dsRNA of cytochromes P450 produced the greatest effect, causing larval mortality of 64% and 52% respectively, followed by dsRNA of mannanase and xylanase, with a mortality rate of 37% and 33%, respectively, for the highest concentration tested.
Loureiro A.,Institute Investigacao Cientifica Tropical |
Nicole M.R.,CIRAD - Agricultural Research for Development |
Varzea V.,Institute Investigacao Cientifica Tropical |
Moncada P.,CENICAFE |
And 2 more authors.
Physiological and Molecular Plant Pathology | Year: 2012
Histological and ultrastructural studies were undertaken to compare Colletotrichum kahawae growth and the sequence of responses it induced in resistant and susceptible coffee genotypes. Coffee resistance was characterized by a restricted fungal growth associated with hypersensitive-like cell death and early accumulation of phenolic compounds, such as flavonoids (cytoplasmic contents) and hydroxycinnamic acid derivatives (cell walls). This accumulation of phenols in the cell walls preceded their lignification and thickening. In the susceptible genotype, a late accumulation of hydroxycinnamic acid derivatives in a number of cell walls and the encasement of some intracellular hyphae were also observed, but these delayed host responses did not prevent fungal growth and sporulation. © 2011 Elsevier Ltd.
Virulence of entomopathogenic nematodes to control Aeneolamia varia (Hemiptera: Cercopidae) in sugarcane [Virulencia de nematodos entomopatógenos para el control del salivazo Aeneolamia varia (Hemiptera: Cercopidae) en caña de azúcar]
Moreno Salguero C.A.,National University of Colombia |
Bustillo Pardey A.E.,Cenicana |
Lopez Nunez J.C.,CENICAFE |
Castro Valderrama U.,Cenicana |
Ramirez Sanchez G.D.,Cenicana
Revista Colombiana de Entomologia | Year: 2012
The spittlebug, Aeneolamia varia (Hemiptera: Cercopidae) is a limiting pest of sugarcane crops in Venezuela. In Colombia, this species has been recorded for over 40 years in Llanos Orientales, attacking pastures. Only in 2007 this insect was detected in sugarcane crops in the Cauca Valley, where we are looking at biological control agents, particularly entomopathogenic nematodes. In this study, we evaluated the virulence of three entomopathogenic nematode species selected in previous laboratory and greenhouse studies, Steinernema sp.1, Heterorhabditis bacteriophora and Heterorhabditis sp. (Gua 31), and two commercially aviable species, Steinernema sp. and Heterorhabditis sp., on IV instar nymphs of A. varia. The most virulent isolates were Heterorhabditis sp. (Gua 31) causing 42.3% of mortality at a dosage of 5 x 1010 JI/ha, and Heterorhabditis bacteriophora in dosage of 1.5 x 1011 JI/ha causing 76% of mortality on nymphs. This information is intended to give the farmer an effective alternative for the integrated management of A. varia.
Effect of convective drying and refractance window on volatile compounds of “bocadillo banana” (Musa acuminata Colla) dried [Efecto del secado convectivo y de ventana de refractancia sobre compuestos volátiles de “banano bocadillo” (Musa acuminata Colla) deshidratado]
Ormaza Z. A.M.,University of Caldas |
Ortiz A.,CENICAFE |
Ayala-Aponte A.A.,University of Cauca
Vitae | Year: 2016
Background: Drying helps to prolong the life of the fruit, causing structural changes, nutritional and aromatic level according to the technique and drying the applied temperatures. Convective drying (CD) is the most popular technique for drying different types of food, while drying window reflectance (WR) is a recent technique that uses infrared energy of water, which helps to reduce quality losses dried and heat-sensitive foods such as fruits. Objectives: The objective of this study was to evaluate the effect of drying method; convective drying and reflectance window on the retention of aromas in samples dried “bocadillo banana”. Methods: the convective drying was performed at 50, 60 and 70°C and the WR 70, 80 and 90°C into slices 2 mm thick and 23 mm in diameter “bocadillo banana”. The volatile compounds (VC) were absorbed by the technique of Solid Phase Microextraction (SPME) and aromatic profile was determined by gases chromatography coupled with mass spectrometry (GC-MS), in terms of percent retention of volatile attribute or description of the flavoring and forming reaction. Results: The technique window reflectance retained on average 80% of the volatile compounds of “bocadillo banana”, observing that the treatment at 80°C was better as it retained the highest percentage (91%) of volatile compounds present in the fresh sample. Moreover, in convective drying they were retained 65% on average of the volatiles “bocadillo banana”, presenting higher retention of impact compounds in the treatment at 50°C. Conclusions: Application of the window reflectance technique increased retention of volatile aroma compounds typical of fresh “bocadillo banana” versus hot air drying. © 2016, Universidad de Antioquia. All rights reserved.
Vieira A.,University of Lisbon |
Cabral A.,University of Lisbon |
Fino J.,University of Lisbon |
Azinheira H.G.,University of Lisbon |
And 11 more authors.
PLoS ONE | Year: 2016
Colletotrichum kahawae is an emergent fungal pathogen causing severe epidemics of Coffee Berry Disease on Arabica coffee crops in Africa. Currently, the molecular mechanisms underlying the Coffea arabica-C. kahawae interaction are still poorly understood, as well as the differences in pathogen aggressiveness, which makes the development of functional studies for this pathosystem a crucial step. Quantitative real time PCR (qPCR) has been one of the most promising approaches to perform gene expression analyses. However, proper data normalization with suitable reference genes is an absolute requirement. In this study, a set of 8 candidate reference genes were selected based on two different approaches (literature and Illumina RNA-seq datasets) to assess the best normalization factor for qPCR expression analysis of C. kahawae samples. The gene expression stability of candidate reference genes was evaluated for four isolates of C. kahawae bearing different aggressiveness patterns (Ang29, Ang67, Zim12 and Que2), at different stages of fungal development and key time points of the plant-fungus interaction process. Gene expression stability was assessed using the pairwise method incorporated in geNorm and the modelbased method used by NormFinder software. For C. arabica-C. kahawae interaction samples, the best normalization factor included the combination of PP1, Act and ck34620 genes, while for C. kahawae samples the combination of PP1, Act and ck20430 revealed to be the most appropriate choice. These results suggest that RNA-seq analyses can provide alternative sources of reference genes in addition to classical reference genes. The analysis of expression profiles of bifunctional catalase-peroxidase (cat2) and trihydroxynaphthalene reductase (thr1) genes further enabled the validation of the selected reference genes. This study provides, for the first time, the tools required to conduct accurate qPCR studies in C. kahawae considering its aggressiveness pattern, developmental stage and host interaction. © 2016 Vieira et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.